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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_11126613_11127812_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11126613 - 11127812
Intron Length:
1200

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
TTGCTATTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
CTCAGTTTAATC
Flanking Amino Acid:
QINENHKGMVNNGKSHPNTK
Intron Amino Acid Position:
32

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
77.7
32
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
82.6
0.73
0.9
76.6
36.5
Minor 5ss
33.3
-1.9
3.2
39.8
40.3
Minor BPS
49.6
-0
1.8
57.9
42

Associated Gene:

Gene:
FAM217B
Ensembl Gene ID:
ENSAPLG00000014012
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014589
11124743 - 11128016
3274