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Intron Name: Anas_platyrhynchos_platyrhynchos_21_11138022_11138686_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

11138022 - 11138686

Intron Length:

665

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTATTTCCC

5'SS Class:

major

3'SS Sequence:

CCTTCTTATGCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTTAT

U12 Branch Point Sequence:

TTTTGGTTAAGT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

67.6

0.42

1.1

40.1

Major BPS

91.4

1.03

0.7

79.9

34.9

Major PPT

81.1

0.7

0.8

76.6

30.9

Minor 5ss

41.8

-0.9

2.7

51.3

40.2

Minor BPS

51.6

0.13

2.6

83.33

44.1

Associated Gene:

Gene:

SYCP2

Ensembl Gene ID:

ENSAPLG00000014080

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014689

11137957 - 11165589

27633