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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_11139545_11139784_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11139545 - 11139784
Intron Length:
240

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGTGTCA
5'SS Class:
major
3'SS Sequence:
ATTTCAATTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
ATAATTTCAATT
Flanking Amino Acid:
VNKLDKLLCQELDKQEFKTI
Intron Amino Acid Position:
56

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.8
0.47
1.1
62.1
39
Major BPS
80
0.75
1
78.6
31
Major PPT
78.5
0.64
0.9
71.6
37.7
Minor 5ss
35.7
-1.6
3.4
47.9
47.7
Minor BPS
52.4
0.15
1.5
67.79
37.2

Associated Gene:

Gene:
SYCP2
Ensembl Gene ID:
ENSAPLG00000014080
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014689
11137957 - 11165589
27633