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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_11140950_11141483_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11140950 - 11141483
Intron Length:
534

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAAAATA
5'SS Class:
major
3'SS Sequence:
TTGTTTATTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TGCTTGTTTATT
Flanking Amino Acid:
LAEDFFNVLLAVYDSRPEGK
Intron Amino Acid Position:
134

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1
75.9
33
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
82.1
0.72
0.8
78.4
34.8
Minor 5ss
36.5
-1.5
3.1
45.8
43.6
Minor BPS
47
-0.1
2.3
67.56
43.7

Associated Gene:

Gene:
SYCP2
Ensembl Gene ID:
ENSAPLG00000014080
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014689
11137957 - 11165589
27633