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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_11141509_11142426_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11141509 - 11142426
Intron Length:
918

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCTTA
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTTCCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTGAT
U12 Branch Point Sequence:
ATAACCTTAAAT
Flanking Amino Acid:
LLAVYDSRPEGKMQMLENFV
Intron Amino Acid Position:
142

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.8
80.2
30.7
Major BPS
74.7
0.61
0.9
63.4
35.6
Major PPT
77.4
0.62
0.7
76.7
25.3
Minor 5ss
42
-0.9
3
55.3
48.9
Minor BPS
71.6
0.75
1.4
82.13
38.2

Associated Gene:

Gene:
SYCP2
Ensembl Gene ID:
ENSAPLG00000014080
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014689
11137957 - 11165589
27633