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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_11142513_11143397_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11142513 - 11143397
Intron Length:
885

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAACATT
5'SS Class:
strong_major
3'SS Sequence:
CCACTCTTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAA
U12 Branch Point Sequence:
TAATATTTAACC
Flanking Amino Acid:
VRISIYVQQEVVRKLNLMLD
Intron Amino Acid Position:
171

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
84.2
33.9
Major BPS
79.5
0.73
0.9
70
36.9
Major PPT
70.6
0.46
0.8
68.8
31.4
Minor 5ss
44.7
-0.6
3.1
66
45.2
Minor BPS
68.8
0.57
1.4
73.73
36.4

Associated Gene:

Gene:
SYCP2
Ensembl Gene ID:
ENSAPLG00000014080
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014689
11137957 - 11165589
27633