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Intron Name: Anas_platyrhynchos_platyrhynchos_21_11143487_11144026_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11143487 - 11144026

Intron Length:

540

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAT|GTAAATAAT

5'SS Class:

major

3'SS Sequence:

CTTACTTTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTGTCAT

U12 Branch Point Sequence:

TTTGACAAAACT

Flanking Amino Acid:

IFSTKEMLPVMSDMGRRILD

Intron Amino Acid Position:

200

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.4

0.65

82.4

29.8

Major BPS

72.5

0.56

1.2

39.9

Major PPT

85.6

0.8

80.3

31.5

Minor 5ss

39.2

-1.2

55.3

42.3

Minor BPS

48.9

-0

2.2

77.86

44.1

Associated Gene:

Gene:

SYCP2

Ensembl Gene ID:

ENSAPLG00000014080

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014689

11137957 - 11165589

27633