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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_11144062_11144673_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11144062 - 11144673
Intron Length:
612

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCATG
5'SS Class:
strong_major
3'SS Sequence:
TATTGTGTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAAAAT
U12 Branch Point Sequence:
TATTCCTGCAAA
Flanking Amino Acid:
DMGRRILDAGDYDLQVAITE
Intron Amino Acid Position:
212

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
77.8
38.7
Major BPS
70.6
0.51
1.1
75.9
34.4
Major PPT
75.3
0.57
1
69.8
41.2
Minor 5ss
37.5
-1.4
3
47.8
47.9
Minor BPS
53
0.09
2
71.21
40.2

Associated Gene:

Gene:
SYCP2
Ensembl Gene ID:
ENSAPLG00000014080
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014689
11137957 - 11165589
27633