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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_11144817_11144894_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11144817 - 11144894
Intron Length:
78

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTCAT
5'SS Class:
major
3'SS Sequence:
TCTGTTTTAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
TCTGTTTTAATA
Flanking Amino Acid:
KGIKDSEFETDCRKFLNQVN
Intron Amino Acid Position:
260

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1
72
39.5
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
76.2
0.59
0.9
73.3
36
Minor 5ss
38.1
-1.3
3.1
55.9
42.3
Minor BPS
65.4
0.48
1.3
69.67
37.9

Associated Gene:

Gene:
SYCP2
Ensembl Gene ID:
ENSAPLG00000014080
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014689
11137957 - 11165589
27633