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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_11144948_11145454_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11144948 - 11145454
Intron Length:
507

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAACTG
5'SS Class:
strong_major
3'SS Sequence:
CCTTTTCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TAGTCTTTGACA
Flanking Amino Acid:
QVNGMLGDKRRVFTYPCLSA
Intron Amino Acid Position:
277

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
68.8
42.1
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
88.7
0.87
0.7
83.3
25.2
Minor 5ss
34.9
-1.7
3.3
47.4
48
Minor BPS
73.4
0.73
1.1
74.9
36.7

Associated Gene:

Gene:
SYCP2
Ensembl Gene ID:
ENSAPLG00000014080
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014689
11137957 - 11165589
27633