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Intron Name: Anas_platyrhynchos_platyrhynchos_21_11145501_11145721_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11145501 - 11145721

Intron Length:

221

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAAGTGC

5'SS Class:

major

3'SS Sequence:

TTTTTCTGTTCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCTTAAT

U12 Branch Point Sequence:

TTTATCTTAATT

Flanking Amino Acid:

CLSAALDKYELQIPLDENLE

Intron Amino Acid Position:

293

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.3

0.69

67.2

39.2

Major BPS

0.92

0.9

86.2

29.1

Major PPT

0.88

0.8

88.7

28.3

Minor 5ss

36.4

-1.5

3.4

50.2

46.4

Minor BPS

81.4

1.06

1.1

92.3

29.9

Associated Gene:

Gene:

SYCP2

Ensembl Gene ID:

ENSAPLG00000014080

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014689

11137957 - 11165589

27633