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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_11148299_11148732_F

Intron Information:

Intron Rank:
16
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
11148299 - 11148732
Intron Length:
434

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTTAC
5'SS Class:
major
3'SS Sequence:
GTGTGTGTGTTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTATATAGAATT
Flanking Amino Acid:
HVVFDESGSQVLVPESQFSP
Intron Amino Acid Position:
420

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.66
1
73
32.2
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
59.3
0.21
1.1
58.1
47.3
Minor 5ss
46.6
-0.3
2.5
61.2
43.7
Minor BPS
48.5
-0
1.8
71.94
38.7

Associated Gene:

Gene:
SYCP2
Ensembl Gene ID:
ENSAPLG00000014080
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014689
11137957 - 11165589
27633