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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_11151992_11152121_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11151992 - 11152121
Intron Length:
130

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTGGAA
5'SS Class:
major
3'SS Sequence:
TATTCTCCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
AGTATTTTATTT
Flanking Amino Acid:
IRDETKLPEKGKCYEEVLKN
Intron Amino Acid Position:
576

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.6
0.51
1.1
63.8
35.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
79.7
0.67
0.8
74.7
30.1
Minor 5ss
34.7
-1.7
3.5
46.2
49
Minor BPS
51.4
0.12
1.6
67.09
38.2

Associated Gene:

Gene:
SYCP2
Ensembl Gene ID:
ENSAPLG00000014080
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014689
11137957 - 11165589
27633