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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_11152195_11152308_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11152195 - 11152308
Intron Length:
114

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TAG|GCAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
ATGTCTTGTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTTTCAAAAATG
Flanking Amino Acid:
ENGATRKQALDDALDIVPDS
Intron Amino Acid Position:
600

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
99.3
1.16
0.7
90.9
28.7
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
71.4
0.48
1
70.2
40.7
Minor 5ss
27.1
-2.6
3.8
41.5
45.1
Minor BPS
48.2
-0.2
2.2
65.51
42.4

Associated Gene:

Gene:
SYCP2
Ensembl Gene ID:
ENSAPLG00000014080
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014689
11137957 - 11165589
27633