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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_11153068_11153405_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11153068 - 11153405
Intron Length:
338

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTATGTTC
5'SS Class:
major
3'SS Sequence:
ACATTTCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TACTGCTGAAAC
Flanking Amino Acid:
NLSSGPTSHTARVSETSLHS
Intron Amino Acid Position:
665

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.8
0.44
1.2
67.9
37.9
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
80.6
0.69
0.9
77.6
35.9
Minor 5ss
37.7
-1.4
3.2
51
45.6
Minor BPS
49.1
-0
2
61.87
43

Associated Gene:

Gene:
SYCP2
Ensembl Gene ID:
ENSAPLG00000014080
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014689
11137957 - 11165589
27633