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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_11153519_11154035_F

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11153519 - 11154035
Intron Length:
517

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGAGTT
5'SS Class:
strong_major
3'SS Sequence:
CTTATTTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
GAATATTCAACA
Flanking Amino Acid:
ETTNSKQSKMKTKSKEMTDA
Intron Amino Acid Position:
703

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
0.9
76.8
31.7
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
83.9
0.76
0.8
77
37.1
Minor 5ss
31.1
-2.2
3.6
44.1
44.7
Minor BPS
50
-0
1.7
60.05
39

Associated Gene:

Gene:
SYCP2
Ensembl Gene ID:
ENSAPLG00000014080
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014689
11137957 - 11165589
27633