Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_11154826_11155473_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11154826 - 11155473

Intron Length:

648

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAATTGGA

5'SS Class:

strong_major

3'SS Sequence:

AATTTATGTCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AATTTAT

U12 Branch Point Sequence:

CCCAATTTAACA

Flanking Amino Acid:

LSKSCFSVNKEKVQNRSLKT

Intron Amino Acid Position:

755

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.5

0.81

74.3

36.3

Major BPS

79.9

0.74

0.9

69.7

37.1

Major PPT

67.9

0.4

59.8

45.4

Minor 5ss

32.1

-2

3.1

41.4

44.9

Minor BPS

51.4

0.04

1.6

56.25

43.2

Associated Gene:

Gene:

SYCP2

Ensembl Gene ID:

ENSAPLG00000014080

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014689

11137957 - 11165589

27633