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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_11157033_11157151_F

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11157033 - 11157151
Intron Length:
119

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGACTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTAATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
TTTTTTTTAATA
Flanking Amino Acid:
TSTEMKAGKKTRNNRDKKHL
Intron Amino Acid Position:
829

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
72.7
37.1
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
86.6
0.82
0.7
85.3
27.9
Minor 5ss
38.2
-1.3
3.3
52.2
38.6
Minor BPS
82.2
1.01
0.9
86.33
25.3

Associated Gene:

Gene:
SYCP2
Ensembl Gene ID:
ENSAPLG00000014080
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014689
11137957 - 11165589
27633