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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_11158808_11159373_F

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11158808 - 11159373
Intron Length:
566

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATACAGT
5'SS Class:
major
3'SS Sequence:
CTTATTTTAATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
CTTATTTTAATA
Flanking Amino Acid:
TSKKEKSKIQKPMNEENRDR
Intron Amino Acid Position:
969

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1
67.7
43.2
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
76.4
0.59
0.9
73.4
35.7
Minor 5ss
46.5
-0.4
2.8
66.5
44.6
Minor BPS
66.6
0.52
1.3
70.89
36

Associated Gene:

Gene:
SYCP2
Ensembl Gene ID:
ENSAPLG00000014080
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014689
11137957 - 11165589
27633