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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_11159561_11159977_F

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11159561 - 11159977
Intron Length:
417

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGCATT
5'SS Class:
strong_major
3'SS Sequence:
CATTGTTTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
TCATTCTTCACG
Flanking Amino Acid:
ESPASLETMRGAERLSEGDV
Intron Amino Acid Position:
1031

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.9
83.5
35.1
Major BPS
77.5
0.68
1
79.6
33
Major PPT
77.6
0.62
0.9
69.5
41.3
Minor 5ss
55
0.17
2.5
74.6
41.7
Minor BPS
58.7
0.13
1.9
63.33
44.7

Associated Gene:

Gene:
SYCP2
Ensembl Gene ID:
ENSAPLG00000014080
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014689
11137957 - 11165589
27633