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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_11160229_11160343_F

Intron Information:

Intron Rank:
35
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11160229 - 11160343
Intron Length:
115

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGAATA
5'SS Class:
strong_major
3'SS Sequence:
TATTTATGCGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTCAATAATG
Flanking Amino Acid:
FSPVMTASSLLNLTPVTPYK
Intron Amino Acid Position:
1115

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
82.6
29.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
70.3
0.46
1
66.6
39.3
Minor 5ss
37.2
-1.4
3
46.4
43
Minor BPS
56.5
0.07
1.9
68.34
38.9

Associated Gene:

Gene:
SYCP2
Ensembl Gene ID:
ENSAPLG00000014080
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014689
11137957 - 11165589
27633