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Intron Name: Anas_platyrhynchos_platyrhynchos_21_11160521_11161257_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11160521 - 11161257

Intron Length:

737

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTATGTTAC

5'SS Class:

strong_major

3'SS Sequence:

GCCTTTCTTGTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TAATAAA

U12 Branch Point Sequence:

AAGCTAATAAAT

Flanking Amino Acid:

TKPIIKNKREEPSPLSVSSG

Intron Amino Acid Position:

1174

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.5

0.91

0.8

80.1

28.4

Major BPS

70.8

0.52

70.6

31.6

Major PPT

77.9

0.63

0.8

72.9

Minor 5ss

46.6

-0.3

2.5

60.6

44.5

Minor BPS

42.9

-0.4

1.8

56.79

38.5

Associated Gene:

Gene:

SYCP2

Ensembl Gene ID:

ENSAPLG00000014080

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014689

11137957 - 11165589

27633