About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_11161340_11161912_F

Intron Information:

Intron Rank:
37
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11161340 - 11161912
Intron Length:
573

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAAACA
5'SS Class:
major
3'SS Sequence:
ATGTTTATTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TAATCCTAAAGT
Flanking Amino Acid:
QECYGPVHESGPTIHTFLKR
Intron Amino Acid Position:
1201

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1
67.9
37.1
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
68.6
0.42
1.1
68.5
40.7
Minor 5ss
32
-2.1
3.1
41.5
44.6
Minor BPS
60.5
0.41
2
78.04
43.9

Associated Gene:

Gene:
SYCP2
Ensembl Gene ID:
ENSAPLG00000014080
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014689
11137957 - 11165589
27633