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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_11162075_11162416_F

Intron Information:

Intron Rank:
38
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11162075 - 11162416
Intron Length:
342

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTAACTAT
5'SS Class:
major
3'SS Sequence:
TACATTTCTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATATTTTTACAT
Flanking Amino Acid:
FKTDDTVTYRVSESLSTASV
Intron Amino Acid Position:
1255

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.5
0.46
1.2
69.4
37.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
80.1
0.68
0.9
77.3
36.6
Minor 5ss
41.2
-1
3
56.2
48
Minor BPS
54.5
0.22
1.7
71.8
39.2

Associated Gene:

Gene:
SYCP2
Ensembl Gene ID:
ENSAPLG00000014080
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014689
11137957 - 11165589
27633