About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_11163220_11163298_F

Intron Information:

Intron Rank:
40
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11163220 - 11163298
Intron Length:
79

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TCTGTTTTGGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TATCTTCTAAAG
Flanking Amino Acid:
ATMNYQLHECRIRQLDKFHL
Intron Amino Acid Position:
1324

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
0.8
79.2
29
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
74.7
0.56
1
72.9
37.4
Minor 5ss
36.7
-1.5
2.6
44.4
43.7
Minor BPS
47.6
-0.3
1.8
55.84
39

Associated Gene:

Gene:
SYCP2
Ensembl Gene ID:
ENSAPLG00000014080
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014689
11137957 - 11165589
27633