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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_11163399_11164203_F

Intron Information:

Intron Rank:
41
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11163399 - 11164203
Intron Length:
805

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTTTGTATT
5'SS Class:
major
3'SS Sequence:
TTTTTCTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TAATTGTTAATA
Flanking Amino Acid:
SLKNMEKEFLAFWKKQKQTL
Intron Amino Acid Position:
1358

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.2
77.4
36.9
Major BPS
84.4
0.85
1
84
34.5
Major PPT
92.4
0.95
0.6
85.4
29.3
Minor 5ss
44.3
-0.6
2.5
58.3
40.2
Minor BPS
57.5
0.23
2
68.8
37.7

Associated Gene:

Gene:
SYCP2
Ensembl Gene ID:
ENSAPLG00000014080
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014689
11137957 - 11165589
27633