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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_11164638_11165109_F

Intron Information:

Intron Rank:
43
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11164638 - 11165109
Intron Length:
472

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTACAA
5'SS Class:
major
3'SS Sequence:
TATCTTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GATACAT
U12 Branch Point Sequence:
TATCTTTTTACA
Flanking Amino Acid:
DYEERIFTSQMHLMKEDMKG
Intron Amino Acid Position:
1404

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1.1
62.4
37.6
Major BPS
57.2
0.18
1.2
67
39.8
Major PPT
88.9
0.88
0.7
83.7
30.9
Minor 5ss
37.4
-1.4
3
47.8
47.7
Minor BPS
58.2
0.25
1.6
69.28
37

Associated Gene:

Gene:
SYCP2
Ensembl Gene ID:
ENSAPLG00000014080
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014689
11137957 - 11165589
27633