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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_11165167_11165516_F

Intron Information:

Intron Rank:
44
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11165167 - 11165516
Intron Length:
350

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAAGGAA
5'SS Class:
major
3'SS Sequence:
GCTTTTTGCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TGTGTGATAATT
Flanking Amino Acid:
GLQEKFLKEMQEEELINVRR
Intron Amino Acid Position:
1423

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.54
1
64.3
35.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
76
0.58
0.9
71.5
38.4
Minor 5ss
28
-2.5
3.5
33.9
44.2
Minor BPS
45.7
-0.2
2.3
68.74
42.7

Associated Gene:

Gene:
SYCP2
Ensembl Gene ID:
ENSAPLG00000014080
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014689
11137957 - 11165589
27633