About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_11170042_11172008_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11170042 - 11172008
Intron Length:
1967

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
CTGTTTCTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTGAA
U12 Branch Point Sequence:
GTAGACTGAAAA
Flanking Amino Acid:
EVHASSKHLTRFHRP*
Intron Amino Acid Position:
582

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
1.2
81.8
38.5
Major BPS
72
0.55
1.1
63.4
44.3
Major PPT
76.2
0.59
0.8
69.5
36.8
Minor 5ss
35.6
-1.6
3
50.5
45.8
Minor BPS
46.7
-0.2
1.8
56.85
41.3

Associated Gene:

Gene:
PHACTR3
Ensembl Gene ID:
ENSAPLG00000014492
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015130
11168723 - 11273176
104454