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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_11172576_11173492_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11172576 - 11173492
Intron Length:
917

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAATCT
5'SS Class:
strong_major
3'SS Sequence:
CTATTTAATGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTTTATTTTACA
Flanking Amino Acid:
REIKQRLTRKLNQRPTVDEL
Intron Amino Acid Position:
510

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
77.5
31.3
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
75.6
0.58
1
70.7
38.7
Minor 5ss
39.9
-1.1
3.2
57.4
46.8
Minor BPS
65.1
0.47
1.8
80.31
35

Associated Gene:

Gene:
PHACTR3
Ensembl Gene ID:
ENSAPLG00000014492
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015130
11168723 - 11273176
104454