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Intron Name: Anas_platyrhynchos_platyrhynchos_21_11177860_11196826_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11177860 - 11196826

Intron Length:

18967

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTAAGTGTA

5'SS Class:

strong_major

3'SS Sequence:

TGTTTTTCCGTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATGTGAT

U12 Branch Point Sequence:

TGGTACAAAATG

Flanking Amino Acid:

IRQQIEMKLSKRLSQRPAVE

Intron Amino Acid Position:

470

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.2

0.88

0.9

84.3

26.3

Major BPS

72.4

0.56

1.2

63.1

44.4

Major PPT

80.8

0.69

0.7

77.5

31.2

Minor 5ss

-1.4

3.3

49.4

41.3

Minor BPS

43.5

-0.6

2.1

49.96

Associated Gene:

Gene:

PHACTR3

Ensembl Gene ID:

ENSAPLG00000014492

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015130

11168723 - 11273176

104454