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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_11202169_11203150_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11202169 - 11203150
Intron Length:
982

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCTGCA
5'SS Class:
major
3'SS Sequence:
CTTCCACCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
TCTTTTGTAAAA
Flanking Amino Acid:
RALATKHRQDSFHGRESKGS
Intron Amino Acid Position:
336

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1.2
66.1
39.9
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
72.7
0.51
0.8
65.5
29.2
Minor 5ss
37.4
-1.4
3.3
50.7
45.6
Minor BPS
50.8
0.02
2.1
67.32
39.7

Associated Gene:

Gene:
PHACTR3
Ensembl Gene ID:
ENSAPLG00000014492
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015130
11168723 - 11273176
104454