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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_11207176_11211720_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11207176 - 11211720
Intron Length:
4545

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTGGAT
5'SS Class:
major
3'SS Sequence:
ATCTTTTTGCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
TTTCCGTTAATT
Flanking Amino Acid:
LHLDELKEDAAKKPSAPVEE
Intron Amino Acid Position:
181

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1.1
67.6
37.3
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
74.1
0.54
1
69.6
41
Minor 5ss
37
-1.5
3.6
55.1
49.2
Minor BPS
69.2
0.68
2
89.41
35.2

Associated Gene:

Gene:
PHACTR3
Ensembl Gene ID:
ENSAPLG00000014492
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015130
11168723 - 11273176
104454