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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_11211904_11216037_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11211904 - 11216037
Intron Length:
4134

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTGGTGTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTAAAT
U12 Branch Point Sequence:
TTAAGATTAAAT
Flanking Amino Acid:
KKGLLEMMEQDTDGKACTGD
Intron Amino Acid Position:
120

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
74.9
37
Major BPS
73.5
0.58
1
79.3
29.4
Major PPT
75.1
0.56
1
69.5
41.6
Minor 5ss
31.1
-2.2
3.1
31.2
42.7
Minor BPS
48.7
-0
2.1
72.62
43.3

Associated Gene:

Gene:
PHACTR3
Ensembl Gene ID:
ENSAPLG00000014492
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015130
11168723 - 11273176
104454