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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_11216116_11216994_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11216116 - 11216994
Intron Length:
879

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGATGA
5'SS Class:
strong_major
3'SS Sequence:
CTACTTCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
ATGCTACTACTT
Flanking Amino Acid:
KNEKLKQTSAVLEKKMTARQ
Intron Amino Acid Position:
94

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
68.9
38.8
Major BPS
84.4
0.85
1
84
34.5
Major PPT
82.2
0.73
0.8
76.7
31.6
Minor 5ss
36.2
-1.6
3.2
47.9
47.5
Minor BPS
40.8
-0.6
2
57.2
39.6

Associated Gene:

Gene:
PHACTR3
Ensembl Gene ID:
ENSAPLG00000014492
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015130
11168723 - 11273176
104454