Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_11217157_11273058_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11217157 - 11273058

Intron Length:

55902

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAACGGCC

5'SS Class:

major

3'SS Sequence:

CTTCCCTTCCCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GTCTAAC

U12 Branch Point Sequence:

TCTGTCTAACTG

Flanking Amino Acid:

AAAAAAGEPADEMEQSPAMR

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.2

0.59

1.2

68.8

Major BPS

66.8

0.42

1.2

69.6

35.5

Major PPT

80.5

0.69

0.7

72.5

32.2

Minor 5ss

-1.6

3.6

50.9

45.8

Minor BPS

44.3

-0.5

49.4

45.6

Associated Gene:

Gene:

PHACTR3

Ensembl Gene ID:

ENSAPLG00000014492

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015130

11168723 - 11273176

104454