About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_11291874_11293414_R

Intron Information:

Intron Rank:
136110
Intron Class:
major
Intron Phase:
Intron Coordinates:
11291874 - 11293414
Intron Length:
1541

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTTTT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTCCAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
TCTTTTCCAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
1.1
87.9
29.3
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
81.3
0.7
0.8
77.7
29.6
Minor 5ss
55.9
0.2
2.5
76
39.7
Minor BPS
50.9
0.03
1.9
67.52
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020639
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040827
11291463 - 11305553
14091
ENSAPLT00000024317
11291463 - 11305553
14091