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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_11293547_11298225_R

Intron Information:

Intron Rank:
136111
Intron Class:
major
Intron Phase:
Intron Coordinates:
11293547 - 11298225
Intron Length:
4679

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTGCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGCAAAA
U12 Branch Point Sequence:
TCTTCTGCCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.93
0.8
83.5
35
Major BPS
47.7
-0.1
1
51
32
Major PPT
77.5
0.62
0.8
72
32.6
Minor 5ss
39.5
-1.2
2.8
48.4
41.7
Minor BPS
44.1
-0.4
2.5
62.68
44.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020639
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040827
11291463 - 11305553
14091
ENSAPLT00000024317
11291463 - 11305553
14091