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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_11298301_11302367_R

Intron Information:

Intron Rank:
136115
Intron Class:
major
Intron Phase:
Intron Coordinates:
11298301 - 11302367
Intron Length:
4067

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCTAAATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATACAT
U12 Branch Point Sequence:
TTTTCCCTAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
1
75.1
35.1
Major BPS
66.1
0.4
1
73
31.5
Major PPT
69.8
0.45
0.9
67
33.1
Minor 5ss
32.4
-2
3.2
42.3
44.8
Minor BPS
74.9
0.86
1.7
94.58
31.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020639
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040827
11291463 - 11305553
14091