About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_11298301_11305388_R

Intron Information:

Intron Rank:
136112
Intron Class:
major
Intron Phase:
Intron Coordinates:
11298301 - 11305388
Intron Length:
7088

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTGGAC
5'SS Class:
major
3'SS Sequence:
TTTCCCTAAATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATACAT
U12 Branch Point Sequence:
TTTTCCCTAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.1
0.5
1.1
62
36.6
Major BPS
66.1
0.4
1
73
31.5
Major PPT
69.8
0.45
0.9
67
33.1
Minor 5ss
35.7
-1.6
3.5
49.3
47.3
Minor BPS
74.9
0.86
1.7
94.58
31.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020639
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024317
11291463 - 11305553
14091