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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_11357357_11360019_F

Intron Information:

Intron Rank:
133517
Intron Class:
major
Intron Phase:
Intron Coordinates:
11357357 - 11360019
Intron Length:
2663

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTAATA
5'SS Class:
major
3'SS Sequence:
TGTTCTCTGACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTATCCAAAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1
75.3
33.9
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
76.6
0.6
1
72.7
37.6
Minor 5ss
43.2
-0.7
2.8
58
46.2
Minor BPS
54.7
0.23
2
79.51
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021816
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034924
11357187 - 11361023
3837