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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_11366411_11422701_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11366411 - 11422701
Intron Length:
56291

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCAGTC
5'SS Class:
major
3'SS Sequence:
TTTGTTTTGGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTACAA
U12 Branch Point Sequence:
AAGTGTACAACC
Flanking Amino Acid:
MLGILSHPWETVTTA
Intron Amino Acid Position:
6

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.7
0.44
1.2
64.4
40.6
Major BPS
58.4
0.21
1.2
67
39.8
Major PPT
82.6
0.73
1
80.6
37
Minor 5ss
39.5
-1.2
3.7
59.1
45.6
Minor BPS
42.2
-0.6
2
51.09
39.6

Associated Gene:

Gene:
PRELID3B
Ensembl Gene ID:
ENSAPLG00000014562
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015188
11366394 - 11425467
59074