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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_11383898_11385119_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11383898 - 11385119
Intron Length:
1222

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAGGTATT
5'SS Class:
major
3'SS Sequence:
CTAATTTCTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TCTTCCCTAATT
Flanking Amino Acid:
AKQKDKLDKKDISGQIREHT
Intron Amino Acid Position:
1566

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
84.6
33.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
78.8
0.65
0.9
72.6
37.4
Minor 5ss
42
-0.9
3.2
59.7
39.1
Minor BPS
74
0.83
1.6
88.6
36.6

Associated Gene:

Gene:
ZNF831
Ensembl Gene ID:
ENSAPLG00000017059
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045681
11382097 - 11401746
19650