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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_11384553_11385119_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11384553 - 11385119
Intron Length:
567

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAGGTATT
5'SS Class:
major
3'SS Sequence:
TACTTTTCCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
CTTATCCTAACT
Flanking Amino Acid:
AKQKDKLDKKTCHN*
Intron Amino Acid Position:
1566

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
84.6
33.2
Major BPS
72
0.55
1
71.8
31.4
Major PPT
76.1
0.59
0.8
69.7
36.4
Minor 5ss
42
-0.9
3.2
59.7
39.1
Minor BPS
62.9
0.48
1.8
81.07
40.5

Associated Gene:

Gene:
ZNF831
Ensembl Gene ID:
ENSAPLG00000017059
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019636
11384538 - 11401746
17209