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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_11422216_11422701_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
11422216 - 11422701
Intron Length:
486

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGA|GTAGGGCCG
5'SS Class:
weak_major
3'SS Sequence:
TTTGTTTTGGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTACAA
U12 Branch Point Sequence:
AAGTGTACAACC
Flanking Amino Acid:
MRIWTSEHVFDHPWETVTTA
Intron Amino Acid Position:
119

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
56.8
0.16
1.2
42.8
38.5
Major BPS
58.4
0.21
1.2
67
39.8
Major PPT
82.6
0.73
1
80.6
37
Minor 5ss
30.9
-2.2
3.5
35.5
41.9
Minor BPS
42.2
-0.6
2
51.09
39.6

Associated Gene:

Gene:
PRELID3B
Ensembl Gene ID:
ENSAPLG00000014562
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028677
11421246 - 11425469
4224