About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_11423301_11423932_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11423301 - 11423932
Intron Length:
632

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTATATTCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTTTACTAAGA
Flanking Amino Acid:
KKTMELKSSNISFTNLVSVD
Intron Amino Acid Position:
93

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
86.5
28.5
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
82.9
0.74
0.8
77
36.7
Minor 5ss
40.8
-1
2.8
57.5
39.6
Minor BPS
49.7
-0
2.2
72.86
38.9

Associated Gene:

Gene:
PRELID3B
Ensembl Gene ID:
ENSAPLG00000014562
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028677
11421246 - 11425469
4224
ENSAPLT00000015188
11366394 - 11425467
59074