About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_11424004_11424584_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11424004 - 11424584
Intron Length:
581

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTACC
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTGTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ACTACTTGGAAA
Flanking Amino Acid:
VYKPHPHEPDKTILTQEAII
Intron Amino Acid Position:
116

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
81.6
29.9
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
82.1
0.72
0.8
79.8
32.2
Minor 5ss
38.7
-1.3
2.7
47.6
34.4
Minor BPS
46.9
-0.2
1.6
54.99
37.3

Associated Gene:

Gene:
PRELID3B
Ensembl Gene ID:
ENSAPLG00000014562
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028677
11421246 - 11425469
4224
ENSAPLT00000015188
11366394 - 11425467
59074