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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_11436660_11436775_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11436660 - 11436775
Intron Length:
116

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGCGGCG
5'SS Class:
major
3'SS Sequence:
TCCCTCTCGCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAC
U12 Branch Point Sequence:
GGGCTCTCACCT
Flanking Amino Acid:
MVAYWRQAGLSYIRYSQICA
Intron Amino Acid Position:
20

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.3
0.34
1.3
55
41.5
Major BPS
72.7
0.56
1
75
30.1
Major PPT
71.1
0.48
0.9
65
36.4
Minor 5ss
33.7
-1.9
3.8
47.1
48.5
Minor BPS
45.8
-0.2
1.8
58.99
43.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014652
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015262
11436601 - 11436899
299