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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_11461355_11461754_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11461355 - 11461754
Intron Length:
400

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTTTTAAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAA
U12 Branch Point Sequence:
ATGTACTGAACA
Flanking Amino Acid:
GEHDPVTEFIAHCKSNFIMV
Intron Amino Acid Position:
573

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.1
1.09
0.7
87
30
Major BPS
74.4
0.61
0.9
63.6
35.5
Major PPT
81.8
0.72
0.9
86.8
24.5
Minor 5ss
35.9
-1.6
3
49.5
46.7
Minor BPS
62.4
0.39
1.7
72.16
39.3

Associated Gene:

Gene:
NELFCD
Ensembl Gene ID:
ENSAPLG00000014867
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015522
11460431 - 11469590
9160