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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_11462355_11462576_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11462355 - 11462576
Intron Length:
222

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGATTATC
5'SS Class:
strong_major
3'SS Sequence:
CCCTCCTTATCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTTCAC
U12 Branch Point Sequence:
TCCTCCTTCACC
Flanking Amino Acid:
EHSQLDVMEQLELKKTLLDR
Intron Amino Acid Position:
483

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
83.2
28.3
Major BPS
65.1
0.38
1.1
68.9
36.5
Major PPT
74.3
0.55
0.8
73.1
30.3
Minor 5ss
34.9
-1.7
2.8
45.4
42.7
Minor BPS
68.3
0.56
1.8
73.91
43.5

Associated Gene:

Gene:
NELFCD
Ensembl Gene ID:
ENSAPLG00000014867
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015522
11460431 - 11469590
9160